Introduction
In the winter of 1918-1919, a disease killed 21 million people worldwide. Despite the continued morbidity of this disease, today most people don’t understand the true public health impact of the “common cold.” Influenza virus, the cause of “the flu,” is an infectious virus that causes significant death and disease each year in the United States. While in most healthy individuals influenza causes a self-limiting disease, influenza is capable of causing serious and life threatening illness.
The influenza virus is a member of the genus Orthomyxoviridae (2). Influenza, which takes its name from the Latin and Italian words for “bad influence,” is often simply called “the flu.” However, one must be careful to distinguish between the “stomach flu,” usually a food-born gastrointestinal illness, from the respiratory infection caused by influenza virus. There are three strains of influenza. Influenza A causes moderate to severe infection in both humans and animals and has great public health impact. Influenza B causes a more mild illness, primarily infects children, and does not infect animals. Influenza C is though to only produce sub-clinical illness and is rarely reported in humans (2).
Influenza virus contains an outer envelope, a lipid bilayer derived from the previous host cell that is studded with viral proteins (see Figure 1). The two most important surface proteins are hemagglutinin (H or HA) and neuraminidase (N or NA) (8). Influenza viruses are categorized on the basis of their hemagglutinin and neuraminidase genes. For example, H3N2 is currently the dominant Influenza A virus in circulation in the United States. The genome of influenza is composed of eight segments of negative stranded RNA. Genetic variation can occur by antigenic drift, the change in nucleic acid sequence of a gene, or antigenetic shift, or the substitution of an entire gene between subtypes. Genetic drift generally produces subtle changes in the virus, whereas genetic shift often produces a novel virus in which large numbers of people may be susceptible.
Figure 1: Electron Micrograph of three influenza virus particles. Picture taken from the National Center for Infectious Disease, CDC. (URL:
http://www.virology.net/Big_Virology/BVRNAortho.html)
Life Cycle and Replication
During an infection cycle, influenza first needs to bind to a target cell. Hemagglutinin located on the outside of the virus is synthesized as a precursor called HA0 and needs to be cleaved, usually at a single site, by the enzyme tryptase Clara to form two subunits called HA1 and HA2. This cleaved hemagglutinin can then bind to sialic acid located on the surface of epithelial and immune cells in the respiratory tract (16). The specificity of influenza for the lungs thus comes mainly from the fact that tryptase Clara is produced from Clara cells in the respiratory tract epithelium. Some influenza viruses carry an HA0 contains multiple sites that can be cleaved by a wide range of proteases and thus can infect cells located throughout the body (26). Hemagglutinin can also sometimes by cleaved by proteases produced in the endoplasmic reticulum or even by various bacteria such as Staphylococcus areus, Haemophilus influenzae, and Streptococcus pneumoniae, leading to a great increase in influenza pathogenicity in people infected with these bacteria.
Once influenza is bound to a host cell, it is endocytosed into a vesicle that is progressively acidified. The acidic environment triggers a series of events that allow the viral genome and associated proteins (ribonucleoprotein) to disassociate from the capsid, and allows the fusion of the viral envelope with the vesicle membrane. These two processes allow the viral nucleoprotein to escape from the vesicle into the cell cytoplasm. Once in the cell cytoplasm, the viral nucleoprotein moves into the host cell nucleus with the aide of a nuclear localization signal (8).
Once influenza ribonucleoprotein is in the cell nucleus, it can begin the process of making viral proteins and replicating its genome. An interesting feature of influenza is that it uses a process called “cap snatching” in which the viral endonuclease cleaves 5’ capped fragments from newly synthesized host cell mRNA and uses these as a primer to make viral PB1, the viral transcriptase (2). This viral transcriptase produces mRNA, which is transported to the cytoplasm to make more viral proteins. The termination of transcription and addition of poly(A) tails to influenza transcripts occurs by a stuttering of the transcription machinery that copies a series of U residues (which code for a poly(A) tail). When a high concentration of viral nucleocapsid protein (NP) has been made, the stuttering process is inhibited, and full length genomes are copied. These genomes enter the cell’s secretory pathway along with viral proteins. Some viral proteins, namely HA and NA, are incorporated into the plasma membrane. New virions are assembled and bud from the apical surface of epithelial cells. Because of the directionality of budding, it is rare to isolate influenza outside of the respiratory system (21).
Pathology
Host pathology occurs by a number of mechanisms. The production of new virions within host epithelial cells disrupts the apical surface of epithelial cells, destroys host cell mRNAs by “cap snatching,” inhibits translation of host proteins, and kills the host cell either by inducing programmed cell death (apoptosis) (19) or by rupturing the plasma membrane during budding (20). However, during infection, some infected cells respond by production interferon, a chemical which has anti-proliferative and immunomodulatory properties, and chemicals which attract immune cells and promote an inflammatory immune response (1, 28). Taken together, these various changes trigger an immune response, affect the integrity of the mucosal layer and mucocilliary clearance, and interfere with the removal of other pathogens from the lungs which often leads to secondary bacterial pneumonia and produces cough (13).
Influenza infections usually manifest a rapid onset of symptoms following a one- to five-day incubation period. These symptoms include a fever, chills, body aches, sore throat, non-productive cough, runny nose, and headache. Illness usually resolves after several days, although symptoms can persist for two weeks or longer. An infected person typically sheds virus for 5-10 days after infection (2). Influenza can cause serious medical complications among people with underlying medical conditions and can lead to secondary infections with other pathogens.
Influenza is usually diagnosed on the basis of symptoms alone, although there are a variety of laboratory tests that can confirm a diagnosis or be used in research. These include enzyme linked immunosorbant assay, reverse-transcription polymerase chain reaction, hemagglutination, and radioimmunoassay (see table 1). Most rapid tests will give results within 24 hours with >70% sensitivity and >90% specificity. Because of the low sensitivity, positive rapid influenza tests are usually followed with viral culture. When serum samples are used for antibody detection, one sample is usually taken within the first week of illness and a second sample is taken two to four weeks later. A positive result is considered a significant rise in serum antibody levels between the two tests (17).
Table 1: Laboratory Diagnostic Procedures for Influenza.
Laboratory Diagnostic Procedures for Influenza1
Procedure
Influenza
types
Detected
Acceptable
Specimens
Time for
Results
Point-of-care
market
Viral culture
A and B
NP Swab2
Throat Swab
Nasal Wash
Bronchial Wash
Nasal Aspirate
Sputum
5-10
days3
No
Immuno-
fluorescence
A and B
NP Swab2
Nasal Wash
Bronchial Wash
Nasal Aspirate
Sputum
2-4
hours
No
Influenza A
Enzyme Immuno
Assay (EIA)
A and B
NP Swab2
Throat Swab
Nasal Wash
Brochial Wash
2
hours
No
Directigen A
(Becton-
Dickinson)
A
NP Swab2
Throat Swab
Nasal Wash
Nasal Aspirate
<30
minutes
Yes
Directigen
Flu A and B
(Becton-
Dickinson)
A and B
NP Swab2
Throat Swab
Nasal Wash
Nasal Aspirate
Bronchial Wash
<30
minutes
Yes
FLU OIA
(Biostar)
A and B4
NP Swab2
Throat Swab
Nasal Aspirate
Sputum
<30
minutes
Yes
Quick Vue
(Quidel)
A and B4
NP Swab2
Nasal Wash
Nasal Aspirate
<30
minutes
Yes
Zstat Flu
(ZymeTx)
A and B4
Throat Swab
<30
minutes
Yes
RT-PCR
A and B
NP Swab2
Throat Swab
Nasal Wash
Bronchial Wash
Nasal Aspirate
Sputum
1-2
days
No
Serology
A and B
Paired Acute and
Convalescent
Serum
Samples5
>2
weeks
No
1 List may not include all test kits approved by the U.S. Food and Drug Administration as of September 1, 2001
2 NP = nasopharyngeal
3 Shell vial culture, if available, may reduce time for results to 2 days
4 Does not distinguish between influenza A and B types
5 A fourfold or greater rise in antibody titer from the acute- (collected within the 1st week of illness) to the
convalescent-phase (collected 2-4 weeks after the acute sample) samples is indicative of recent infection.
Table 1: comparison of various methods used clinically to detect influenza A and B. Taken from the Detection & Control of Influenza Outbreaks in Acute Care Facilities. (URL:
http://www.cdc.gov/ncidod/hip/INFECT/flu_acute.htm)
Children and teenagers infected with influenza are at risk of developing a rare complication called Reye’s syndrome if given salicylates such as aspirin. Reye’s syndrome affects the central nervous system and liver and can be fatal (13). Thus, it is important that young people who show flu-like symptoms are not given aspirin.
Epidemiology
Influenza is a major cause of morbidity and mortality in the United States and globally. The level of influenza activity can be categorized as endemic, epidemic, or pandemic. Endemic refers to the “normal” or baseline rate of disease. An epidemic is a level of disease greater than expected, and a pandemic is a world-wide epidemic (see Figure 2). During epidemic years, influenza can increase hospitalization rates two- to five-fold, lead to more than 10,000 excess deaths, and cause 80% of all deaths in persons over age 65 (15). During the 1997 epidemic, influenza was the 6th leading cause of death. It has been estimated that between 1972 and 1992, influenza was responsible for 426,000 deaths in the U.S. alone (20).
Figure 2. Diagram showing the percent of deaths due to influenza and pneumonia over time. The lower curve shows the endemic level and the upper curve shows the “epidemic threshold.” Overlaid is the pneumonia and influenza mortality rate for 122 U.S. cities for the week ending 3/23/02. Taken from the 1999-2000 Influenza Season Summary, CDC. (URL:
http://www.cdc.gov/ncidod/diseases/flu/weekly.htm)
Influenza epidemics are thought to typically originate in Asia where the interaction of aquatic birds, pigs, and humans allows the periodic generation and introduction of novel strains. Waterfowl are the natural reservoirs of influenza, where the virus replicates while causing no disease. These birds then excrete the virus in high concentration in feces into the water. While avian influenza is in evolutionary stasis with nearly no major changes occurring in the past 60 years (24), each year a new group of young ducks hatch and serve as a new susceptible population. Furthermore, migrating birds serve as a means of transmitting the virus over long distances. This process makes aquatic birds a very efficient means of transmitting virus. Phylogenic analysis of nucleic acid sequences of influenza A viruses from around the world suggests that all mammalian influenza viruses derive from the avian reservoir (9). Live bird markets may also be an important source of influenza viruses (24). Fecal contamination of water is probably responsible for the transmission of avian influenza viruses to mammal such as pigs, horses, and humans. Influenza outbreaks of avian origin have been implicated in outbreaks in various mammals including seals (10), whales (11), pigs and domestic poultry (9). Once humans have been infected, transmission of influenza is thought to occur rapidly primarily between people by respiratory means such as sneezing and coughing, and global spread is likely, especially for extremely virulent strains.
Since novel influenza strains are first seen in avian, and to a lesser extent, porcine species, the World Health Organization has established a sentinel program that tracks changes in circulating influenza viruses and notes the emergence of novel strains in an attempt to predict what the dominant strains will be in the upcoming flu season. Each year, the 110 centers and 180 laboratories located in 83 countries send isolates to the Centers for Disease Control and Prevention (CDC) in Atlanta where they are analyzed in an attempt to gauge their likelihood of causing outbreaks and severe illness. Between January and March, the CDC, together with the Food and Drug Administration, decide which strains should be used for vaccine production. The pharmaceutical companies licensed to produce vaccine then attempt to produce a sufficient quantity in time for the major vaccination campaigns beginning in late September (15). If all goes well, the majority of high-risk individuals will have been vaccinated and had time to form an immune response before influenza infection peaks in December through March (see figure 3).
Figure 3. A plot of the number of isolates from clinical laboratories during the current flu season (2001-2002). Graph taken from the National Respiratory Virus Surveillance System, WHO/CDC. (URL:
http://www.cdc.gov/ncidod/diseases/flu/weekly.htm)
Immunization and Antiviral Treatment
Immunization is the primary method of limiting the public health impact of influenza. The vaccine is either whole or split inactivated vaccine that contains antigens from the three strains of influenza (two influenza A strains, and one influenza B strain) that are predicted to have the greatest impact in that year. Since novel influenza strains are constantly being introduced (or reintroduced) into human populations, previous years’ vaccines are not very effective. Efficacy is highly correlated with the match between the predicted virus strains and what actually circulates, and in most years the vaccine is a very good match with the major circulating viruses. For example, the typical vaccine is (15):
· up to 90% effective in preventing clinical illness in young, healthy people
· 30-40% effective in preventing illness in frail, elderly people
· 50-60% effective in preventing hospitalization
· 80% effective in preventing death
It is important to realize that while the vaccine may not be able to completely protect individuals from clinical infection (especially among the elderly who are thought to mount an incomplete or poor response to the vaccine), it is still effective in preventing the more serious complications of infection which result in hospitalization and death.
The vaccine is not only efficacious, but it is also extremely safe. Therefore, it is highly recommended that the following individuals receive the vaccine (4):
· all people over 65
· persons under 6 months with chronic illness
· all persons with various chronic illnesses (pulmonary, cardiovascular, metabolic, renal, hemoglobinopathies, immunosuppression)
· HIV-positive individuals
· Providers of essential services
· Foreign travelers
· Residents of long-term care facilities
· 6-18 year olds receiving aspirin therapy
· Pregnant women
· Health care providers
· Employees of long-term care facilities
· Household members of high-risk persons
· Anyone who wishes to reduce their risk of influenza
However, there are a some individuals to whom the vaccine should not be given, including those who are allergic to a vaccine component, including eggs, and those with moderate to severe illness. There is also a range of adverse effects associated with the vaccine, including (18):
· Local reactions such as arm soreness (less than 30%)
· Fever or malaise (less than 1%)
· Severe allergic reactions (rare)
· Neurological reactions (very rare)
Due to the difficulty in producing the vaccine, and the critical issues of timing, the vaccine supply sometimes fails to meet the perceived need in a timely manner. In years in which that occurs, the vaccine may only initially be offered to those who are highest risk of morbidity and mortality from influenza, and health care workers.
The cost effectiveness of the influenza vaccine varies based upon what population received the vaccine, the severity of the circulating influenza viruses, and the match between the vaccine and the dominant viruses. A study examining the cost effectiveness of influenza vaccination among healthy workers found a net societal loss both when the match was poor (net societal cost of $65.59 per person) and when the match was very good (net societal loss of $11) (7). A study of Medicare recipients found that the net societal cost of administering the influenza vaccine to the Medicare population was approximately zero, although the cost per year of life gained were significantly lower compared to other prevention programs. Specifically, if we assume a vaccination rate of 40% and reduction in reducing hospitalizations and deaths, the influenza vaccine would cost $145 per year life gained. This compares favorably against other preventive measures, such as the pneumococcal vaccine ($1853 per year of healthy life gained) and cervical cancer screening ($1600-2900 per year of healthy life gained) (3).
While antibiotics are ineffective against viruses, four drugs have been developed and licensed for the prevention and treatment of infections (see table 2). The first two to market, amantadine and rimantadine, seem to interfere with the replication of the virus, and are 70-90% effective in preventing clinical illness when used within 48 hours of infection. An important point is that while these drugs reduce clinical illness, it is thought that they still allow sub-clinical infection and an active immune response for long-term protection.
In 1999, zanamivir and oseltamivir, two neuraminidase inhibitors were licensed for the reduction in severity of influenza infections. Like amantadine and rimantidine, these drugs must be given within 48 hours of the onset of symptoms to be effective. Unlike the amantadine and rimantidine, these two drugs are generally not used prophylacticly, are generally used in older individuals, and are effective in treating both influenza A and B infections (16).
Table 2: Comparison of Antiviral Drugs for Influenza Treatment.
Comparison of Antiviral Drugs for Influenza Table
Drug
Trade Name
Influenza Virus Type
Approved Use
Treatment Age
Prevention Age
amantadine
Symmetrel®
A
Treatment and Prevention
>1 year
>1 year
rimantadine
Flumadine®
A
Treatment and Prevention
Adults
>1 year
zanamivir
Relenza®
A and B
Treatment
>7 years
n/a
oseltamivir
Tamiflu®
A and B
Treatment
and
Prevention
>1 years
>13 years
Table 2: a comparison on the four FDA approved drugs used in the treatment of influenza. Taken from MMWR, April 20, 2001. (URL:
http://www.cdc.gov/ncidod/diseases/flu/fluviral.htm)
Summary
Influenza virus is a major public health concern. The ubiquitous “common cold” can be anything but mild and is capable of turning regional epidemics into global pandemics. By utilizing a large and dynamic reservoir and constantly changing its antigenic profile, influenza remains an ever-present threat. Through vigilant immunization and the selected use of antiviral therapies, we can hope to significantly reduce the burden of this disease.
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